PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016233-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 381aa    MW: 42396.8 Da    PI: 7.9131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016233-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09226271555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h++   rRR+++ ++ + Lr+l+P++     +K++ a++Le+A +Y+k Lq
  WALNUT_00016233-RA 226 HSKLASRRRQKLSEKTQSLRKLMPWD-----TKMDMATMLEEAHKYVKFLQ 271
                         778889*******************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.484221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11222281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-10224275No hitNo description
Gene3DG3DSA:4.10.280.103.1E-10226278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MERGFDTSFA GGEGCEEGSF NSMFSGVSLQ SLLTDNTLLP FYADYFPLED VNSKPTTTTS  60
FPFSFFSEDY PSTHNCHRLG VGGAPLNFNN NEDSEDNKKL KLPKSEPLAY EQFDAESTHA  120
HEPFHFLTNS PVLSHDQLKC SSVFPHLPLL QSLEHSHSQP QPQPQLFPSA SVSPSKRLRL  180
DSTTSTNSQT LESIVQSCYR YHVPSLNLNL NPSTVVLSSQ PAVMPHSKLA SRRRQKLSEK  240
TQSLRKLMPW DTKMDMATML EEAHKYVKFL QAQVKALQTM PSSSSFSAFT PAQSLYSGVF  300
GGLGRLTRNQ ILQVLVNSPV AQTMLYSQGC CVFAAEQMAL LGKIAERKLL FQQQKQKQQQ  360
NVAFNHSSTS SSSTSRGFFL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.18e-24bHLH family protein